Structural Similarities for the Entities in PDB 1MDA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains H,J

Description: METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT) protein | Length: 368

No structure alignment results are available for 1MDA.H, 1MDA.J explicitly.

These chains are represented by chain 3SJL.D which has more than 40% sequence identity.

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View how chain 1MDA.J compares with the representative chain PDP:3SJLDa. Select a comparison method:


Entity #2 | Chains L,M

Description: METHYLAMINE DEHYDROGENASE (LIGHT SUBUNIT) protein | Length: 121

No structure alignment results are available for 1MDA.L, 1MDA.M explicitly.

These chains are represented by chain 2OIZ.D which has more than 40% sequence identity.

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View how chain 1MDA.M compares with the representative chain PDP:2OIZDa. Select a comparison method:


Entity #3 | Chains A,B

Description: AMICYANIN protein | Length: 103

No structure alignment results are available for 1MDA.A, 1MDA.B explicitly.

These chains are represented by chain 2OV0.a which is 100% sequence identical.

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View how chain 1MDA.B compares with the representative chain d2ov0a1. Select a comparison method:


References