Structural Similarities for the Entities in PDB 1M9X

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,E,F

Description: Cyclophilin A protein | Length: 165

No structure alignment results are available for 1M9X.A, 1M9X.B, 1M9X.E, 1M9X.F explicitly.

These chains are represented by chain 2WFI.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1M9X.F compares with the representative chain PDP:2WFIAa. Select a comparison method:


Entity #2 | Chains C,D,G,H

Description: HIV-1 Capsid protein | Length: 146

No structure alignment results are available for 1M9X.C, 1M9X.D, 1M9X.G, 1M9X.H explicitly.

These chains are represented by chain 2WLV.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1M9X.H compares with the representative chain PDP:2WLVAa. Select a comparison method:


References