Structural Similarities for the Entities in PDB 1M8W

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C

Description: 5'-R(P*UP*UP*GP*UP*AP*UP*AP*U)-3' rna | Length: 8

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D

Description: 5'-R(P*UP*GP*UP*AP*UP*AP*U)-3' rna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains E

Description: 5'-R(P*UP*UP*GP*UP*CP*CP*AP*G)-3' rna | Length: 8

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains F

Description: 5'-R(P*UP*GP*UP*CP*CP*AP*G)-3' rna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains A,B

Description: Pumilio 1 protein | Length: 349

No structure alignment results are available for 1M8W.A, 1M8W.B explicitly.

These chains are represented by chain 5KLA.A which has more than 70% sequence identity.

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View how chain 1M8W.B compares with the representative chain PDP:5KLAAa. Select a comparison method:


References