Structural Similarities for the Entities in PDB 1M8V

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains O,P,Q,R,S,T,U

Description: 5'-R(P*UP*UP*UP*UP*UP*UP*U)-3' rna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains A,B,C,D,E,F,G,H,I,J,K,L,M,N

Description: PUTATIVE SNRNP SM-LIKE PROTEIN protein | Length: 77

No structure alignment results are available for 1M8V.A, 1M8V.B, 1M8V.C, 1M8V.D, 1M8V.E, 1M8V.F, 1M8V.G, 1M8V.H, 1M8V.I, 1M8V.J, 1M8V.K, 1M8V.L, 1M8V.M, 1M8V.N explicitly.

These chains are represented by chain 1TH7.a which has more than 50% sequence identity.

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View how chain 1M8V.N compares with the representative chain d1th7a1. Select a comparison method:


References