Structural Similarities for the Entities in PDB 1M6X

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E,F

Description: Symmetrized FRT site dna | Length: 13

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains I,J

Description: Symmetrized FRT site dna | Length: 20

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains G,H

Description: Symmetrized FRT site dna | Length: 33

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A,B

Description: Flp recombinase protein | Length: 423

No structure alignment results are available for 1M6X.A, 1M6X.B explicitly.

These chains are represented by chain 1P4E.a which has more than 95% sequence identity.

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View how chain 1M6X.B compares with the representative chain d1p4ea1. Select a comparison method:


Entity #5 | Chains C,D

Description: Flp recombinase protein | Length: 423

No structure alignment results are available for 1M6X.C, 1M6X.D explicitly.

These chains are represented by chain 1P4E.a which has more than 95% sequence identity.

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View how chain 1M6X.D compares with the representative chain d1p4ea1. Select a comparison method:


References