Structural Similarities for the Entities in PDB 1M56

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,G

Description: CYTOCHROME C OXIDASE protein | Length: 566

No structure alignment results are available for 1M56.A, 1M56.G explicitly.

These chains are represented by chain 5B1A.A which has more than 50% sequence identity.

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View how chain 1M56.G compares with the representative chain PDP:5B1AAa. Select a comparison method:


Entity #2 | Chains B,H

Description: CYTOCHROME C OXIDASE protein | Length: 264

No structure alignment results are available for 1M56.B, 1M56.H explicitly.

These chains are represented by chain 2GSM.b which is 100% sequence identical.

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View how chain 1M56.H compares with the representative chain d2gsmb1. Select a comparison method:


Entity #3 | Chains C,I

Description: CYTOCHROME C OXIDASE protein | Length: 266

No structure alignment results are available for 1M56.C, 1M56.I explicitly.

These chains are represented by chain 5B1A.C which has more than 40% sequence identity.

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View how chain 1M56.I compares with the representative chain PDP:5B1ACa. Select a comparison method:


Entity #4 | Chains D,J

Description: CYTOCHROME C OXIDASE protein | Length: 51

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References