Structural Similarities for the Entities in PDB 1M3D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Dec-31-1969

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,D,E,G,H,J,K

Description: Type IV Collagen Noncollagenous Domain- Alpha1 protein | Length: 229

No structure alignment results are available for 1M3D.A, 1M3D.B, 1M3D.D, 1M3D.E, 1M3D.G, 1M3D.H, 1M3D.J, 1M3D.K explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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View how chain 1M3D.K compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains C,F,I,L

Description: Type IV Collagen Noncollagenous Domain- Alpha2 protein | Length: 227

No structure alignment results are available for 1M3D.C, 1M3D.F, 1M3D.I, 1M3D.L explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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References