Structural Similarities for the Entities in PDB 1M2Z

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: glucocorticoid receptor protein | Length: 257

No structure alignment results are available for 1M2Z.A, 1M2Z.D explicitly.

These chains are represented by chain 4PF3.A which has more than 70% sequence identity.

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View how chain 1M2Z.D compares with the representative chain PDP:4PF3Aa. Select a comparison method:


Entity #2 | Chains B,E

Description: nuclear receptor coactivator 2 protein | Length: 21

No structure alignment results are available for 1M2Z.B, 1M2Z.E explicitly.

These chains are represented by chain 3GN8.C which is 100% sequence identical.

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View how chain 1M2Z.E compares with the representative chain PDP:3GN8C_. Select a comparison method:


References