Structural Similarities for the Entities in PDB 1M1Y

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,I,K

Description: Nitrogenase molybdenum-iron protein alpha chain protein | Length: 491

No structure alignment results are available for 1M1Y.A, 1M1Y.C, 1M1Y.I, 1M1Y.K explicitly.

These chains are represented by chain 3U7Q.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1M1Y.K compares with the representative chain PDP:3U7QAa. Select a comparison method:


Entity #2 | Chains B,D,J,L

Description: Nitrogenase molybdenum-iron protein beta chain protein | Length: 522

No structure alignment results are available for 1M1Y.B, 1M1Y.D, 1M1Y.J, 1M1Y.L explicitly.

These chains are represented by chain 3U7Q.B which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1M1Y.L compares with the representative chain PDP:3U7QBa. Select a comparison method:


Entity #3 | Chains E,F,G,H,M,N,O,P

Description: nitrogenase IRON protein 1 protein | Length: 289

No structure alignment results are available for 1M1Y.E, 1M1Y.F, 1M1Y.G, 1M1Y.H, 1M1Y.M, 1M1Y.N, 1M1Y.O, 1M1Y.P explicitly.

These chains are represented by chain 4WZA.E which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1M1Y.P compares with the representative chain PDP:4WZAEa. Select a comparison method:


References