Structural Similarities for the Entities in PDB 1M11

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains R

Description: decay-accelerating factor protein | Length: 243

No structure alignment results are available for 1M11.R explicitly.

It is represented by chain 1OK3.a which is 100% sequence identical.

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Entity #2 | Chains 1

Description: COAT PROTEIN VP1 protein | Length: 278

No structure alignment results are available for 1M11.1 explicitly.

It is represented by chain 4Q4W.1 which has more than 40% sequence identity.

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Entity #3 | Chains 2

Description: COAT PROTEIN VP2 protein | Length: 254

No structure alignment results are available for 1M11.2 explicitly.

It is represented by chain 4Q4W.2 which has more than 50% sequence identity.

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Entity #4 | Chains 3

Description: COAT PROTEIN VP3 protein | Length: 238

No structure alignment results are available for 1M11.3 explicitly.

It is represented by chain 4Q4W.3 which has more than 50% sequence identity.

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References