Structural Similarities for the Entities in PDB 1M06

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-18-2016

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains F

Description: Capsid Protein protein | Length: 431

No structure alignment results are available for 1M06.F explicitly.

It is represented by chain 2BPA.1 which has more than 70% sequence identity.

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View how chain 1M06.F compares with the representative chain d2bpa1_. Select a comparison method:

Entity #2 | Chains G

Description: Major spike protein protein | Length: 187


Entity #3 | Chains J

Description: Small core protein protein | Length: 24


Entity #4 | Chains X

Description: 5'-D(P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR)P*(3DR))-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.