Structural Similarities for the Entities in PDB 1LTX

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT protein | Length: 567

No structure alignment results are available for 1LTX.A explicitly.

It is represented by chain 1DCE.a which is 100% sequence identical.

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Entity #2 | Chains B

Description: RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT protein | Length: 331

No structure alignment results are available for 1LTX.B explicitly.

It is represented by chain 3DSS.b which is 100% sequence identical.

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Entity #3 | Chains R

Description: Rab Escort Protein 1 protein | Length: 650

No structure alignment results are available for 1LTX.R explicitly.

It is represented by chain 1VG0.a which has more than 95% sequence identity.

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Entity #4 | Chains P

Description: AAAA protein | Length: 4

This entity is too short to be considered for the all vs. all structure alignments.


References