Structural Similarities for the Entities in PDB 1LM8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains B

Description: ELONGIN B protein | Length: 118

No structure alignment results are available for 1LM8.B explicitly.

It is represented by chain 4AJY.B which is 100% sequence identical.

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View how chain 1LM8.B compares with the representative chain PDP:4AJYBa. Select a comparison method:


Entity #2 | Chains C

Description: ELONGIN C protein | Length: 96

No structure alignment results are available for 1LM8.C explicitly.

It is represented by chain 4AJY.C which is 100% sequence identical.

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View how chain 1LM8.C compares with the representative chain PDP:4AJYCa. Select a comparison method:


Entity #3 | Chains V

Description: Von Hippel-Lindau disease tumor suppressor protein | Length: 160

No structure alignment results are available for 1LM8.V explicitly.

It is represented by chain 4AJY.V which is 100% sequence identical.

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View how chain 1LM8.V compares with the representative chain PDP:4AJYVa. Select a comparison method:


Entity #4 | Chains H

Description: Hypoxia-inducible factor 1 alpha protein | Length: 20

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References