Structural Similarities for the Entities in PDB 1LEI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C

Description: 5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3' dna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D

Description: 5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3' dna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein | Length: 274

No structure alignment results are available for 1LEI.A explicitly.

It is represented by chain 1A3Q.a which has more than 40% sequence identity.

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View how chain 1LEI.A compares with the representative chain d1a3qa1. Select a comparison method:


Entity #4 | Chains B

Description: NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein | Length: 313

No structure alignment results are available for 1LEI.B explicitly.

It is represented by chain 1A3Q.a which has more than 50% sequence identity.

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View how chain 1LEI.B compares with the representative chain d1a3qa1. Select a comparison method:


References