Structural Similarities for the Entities in PDB 1LE9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,G

Description: 5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)-3' dna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D,H

Description: 5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)-3' dna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,E

Description: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein | Length: 274

No structure alignment results are available for 1LE9.A, 1LE9.E explicitly.

These chains are represented by chain 1A3Q.a which has more than 40% sequence identity.

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View how chain 1LE9.E compares with the representative chain d1a3qa1. Select a comparison method:


Entity #4 | Chains B,F

Description: NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein | Length: 313

No structure alignment results are available for 1LE9.B, 1LE9.F explicitly.

These chains are represented by chain 1A3Q.a which has more than 50% sequence identity.

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View how chain 1LE9.F compares with the representative chain d1a3qa1. Select a comparison method:


References