Structural Similarities for the Entities in PDB 1LDK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: CULLIN HOMOLOG protein | Length: 396

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Entity #2 | Chains B

Description: CULLIN HOMOLOG protein | Length: 366

No structure alignment results are available for 1LDK.B explicitly.

It is represented by chain 4P5O.A which has more than 95% sequence identity.

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View how chain 1LDK.B compares with the representative chain PDP:4P5OAa. Select a comparison method:


Entity #3 | Chains C

Description: ring-box protein 1 protein | Length: 90

No structure alignment results are available for 1LDK.C explicitly.

It is represented by chain 3DPL.r which is 100% sequence identical.

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View how chain 1LDK.C compares with the representative chain d3dplr1. Select a comparison method:


Entity #4 | Chains D

Description: CYCLIN A/CDK2-ASSOCIATED PROTEIN P19 protein | Length: 133

No structure alignment results are available for 1LDK.D explicitly.

It is represented by chain 2P1M.A which has more than 50% sequence identity.

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View how chain 1LDK.D compares with the representative chain PDP:2P1MAa. Select a comparison method:


Entity #5 | Chains E

Description: SKP2-like protein type gamma protein | Length: 41

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References