Structural Similarities for the Entities in PDB 1LD9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: MHC CLASS I H-2LD HEAVY CHAIN protein | Length: 268

No structure alignment results are available for 1LD9.A, 1LD9.D explicitly.

These chains are represented by chain 1K5N.a which has more than 70% sequence identity.

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View how chain 1LD9.D compares with the representative chain d1k5na1. Select a comparison method:


Entity #2 | Chains B,E

Description: BETA-2 MICROGLOBULIN protein | Length: 99

No structure alignment results are available for 1LD9.B, 1LD9.E explicitly.

These chains are represented by chain 1K5N.b which has more than 70% sequence identity.

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View how chain 1LD9.E compares with the representative chain d1k5nb_. Select a comparison method:


Entity #3 | Chains C,F

Description: NANO-PEPTIDE protein | Length: 9

This entity is too short to be considered for the all vs. all structure alignments.


References