Structural Similarities for the Entities in PDB 1LD4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: Coat protein C protein | Length: 264

No structure alignment results are available for 1LD4.A, 1LD4.B, 1LD4.C, 1LD4.D explicitly.

These chains are represented by chain 1KXF.a which has more than 95% sequence identity.

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View how chain 1LD4.D compares with the representative chain d1kxfa_. Select a comparison method:


Entity #2 | Chains E,F,G,H,I,J,K,L

Description: GENERAL CONTROL PROTEIN GCN4 protein | Length: 57

No structure alignment results are available for 1LD4.E, 1LD4.F, 1LD4.G, 1LD4.H, 1LD4.I, 1LD4.J, 1LD4.K, 1LD4.L explicitly.

These chains are represented by chain 2DGC.a which is 100% sequence identical.

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View how chain 1LD4.L compares with the representative chain d2dgca_. Select a comparison method:


Entity #3 | Chains M,N,O,P

Description: Spike glycoprotein E1 protein | Length: 439

No structure alignment results are available for 1LD4.M, 1LD4.N, 1LD4.O, 1LD4.P explicitly.

These chains are represented by chain 3N44.F which has more than 50% sequence identity.

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View how chain 1LD4.P compares with the representative chain PDP:3N44Fa. Select a comparison method:


References