Structural Similarities for the Entities in PDB 1LB1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: Guanine nucleotide exchange factor DBS protein | Length: 353

No structure alignment results are available for 1LB1.A, 1LB1.C, 1LB1.E, 1LB1.G explicitly.

These chains are represented by chain 1KZ7.a which has more than 95% sequence identity.

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Entity #2 | Chains B,D,F,H

Description: Transforming protein RhoA protein | Length: 192

No structure alignment results are available for 1LB1.B, 1LB1.D, 1LB1.F, 1LB1.H explicitly.

These chains are represented by chain 5C4M.A which has more than 95% sequence identity.

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References