1LAS

Solution Structure of the B-DNA Duplex CGCGGTXTCCGCG (X=PdG) Containing the 1,N2-propanodeoxyguanosine Adduct with the Deoxyribose at C20 Opposite PdG in the C3' Endo Conformation.


Structural Similarities for the Entities in PDB 1LAS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 5'-D(*CP*GP*CP*GP*GP*TP*(P)P*TP*CP*CP*GP*CP*G)-3' dna | Length: 13

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: 5'-D(*CP*GP*CP*GP*GP*AP*(DNR)P*AP*CP*CP*GP*CP*G)-3' dna | Length: 13

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References