Structural Similarities for the Entities in PDB 1L9Z

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains U

Description: nontemplate DNA strand dna | Length: 35

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains T

Description: template DNA strand dna | Length: 30

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,B

Description: RNA POLYMERASE, ALPHA SUBUNIT protein | Length: 314

No structure alignment results are available for 1L9Z.A, 1L9Z.B explicitly.

These chains are represented by chain 2A6H.a which has more than 70% sequence identity.

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View how chain 1L9Z.B compares with the representative chain d2a6ha1. Select a comparison method:


Entity #4 | Chains C

Description: RNA POLYMERASE, BETA SUBUNIT protein | Length: 1118

No structure alignment results are available for 1L9Z.C explicitly.

It is represented by chain 2A6H.c which has more than 90% sequence identity.

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View how chain 1L9Z.C compares with the representative chain d2a6hc1. Select a comparison method:


Entity #5 | Chains D

Description: RNA POLYMERASE, BETA-PRIME SUBUNIT protein | Length: 1524

No structure alignment results are available for 1L9Z.D explicitly.

It is represented by chain 2A6H.d which has more than 90% sequence identity.

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View how chain 1L9Z.D compares with the representative chain d2a6hd1. Select a comparison method:


Entity #6 | Chains E

Description: RNA POLYMERASE, OMEGA SUBUNIT protein | Length: 99

No structure alignment results are available for 1L9Z.E explicitly.

It is represented by chain 2A6H.e which has more than 90% sequence identity.

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Entity #7 | Chains H

Description: SIGMA FACTOR SIGA protein | Length: 438

No structure alignment results are available for 1L9Z.H explicitly.

It is represented by chain 2A6H.f which has more than 70% sequence identity.

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References