Structural Similarities for the Entities in PDB 1L9J

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L,R

Description: REACTION CENTER PROTEIN L CHAIN protein | Length: 281

No structure alignment results are available for 1L9J.L, 1L9J.R explicitly.

These chains are represented by chain 2WJN.L which has more than 50% sequence identity.

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View how chain 1L9J.R compares with the representative chain PDP:2WJNLa. Select a comparison method:


Entity #2 | Chains M,S

Description: REACTION CENTER PROTEIN M CHAIN protein | Length: 307

No structure alignment results are available for 1L9J.M, 1L9J.S explicitly.

These chains are represented by chain 2WJN.M which has more than 50% sequence identity.

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View how chain 1L9J.S compares with the representative chain PDP:2WJNMa. Select a comparison method:


Entity #3 | Chains H,T

Description: REACTION CENTER PROTEIN H CHAIN protein | Length: 260

No structure alignment results are available for 1L9J.H, 1L9J.T explicitly.

These chains are represented by chain 2WJN.H which has more than 40% sequence identity.

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View how chain 1L9J.T compares with the representative chain PDP:2WJNHa. Select a comparison method:


Entity #4 | Chains C,D

Description: cytochrome c-2 protein | Length: 124

No structure alignment results are available for 1L9J.C, 1L9J.D explicitly.

These chains are represented by chain 4N0K.A which has more than 40% sequence identity.

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View how chain 1L9J.D compares with the representative chain PDP:4N0KAa. Select a comparison method:


References