Structural Similarities for the Entities in PDB 1L4A

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: SYNAPTOBREVIN protein | Length: 80

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Entity #2 | Chains B

Description: S-SYNTAXIN protein | Length: 88

No structure alignment results are available for 1L4A.B explicitly.

It is represented by chain 1SFC.b which has more than 70% sequence identity.

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View how chain 1L4A.B compares with the representative chain d1sfcb_. Select a comparison method:


Entity #3 | Chains C

Description: S-SNAP25 fusion protein protein | Length: 83

No structure alignment results are available for 1L4A.C explicitly.

It is represented by chain 1N7S.c which has more than 40% sequence identity.

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View how chain 1L4A.C compares with the representative chain d1n7sc_. Select a comparison method:


Entity #4 | Chains D

Description: S-SNAP25 fusion protein protein | Length: 87

No structure alignment results are available for 1L4A.D explicitly.

It is represented by chain 1N7S.d which has more than 50% sequence identity.

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View how chain 1L4A.D compares with the representative chain d1n7sd_. Select a comparison method:


Entity #5 | Chains E

Description: SYNAPHIN A protein | Length: 79

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References