Structural Similarities for the Entities in PDB 1KZU

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G

Description: LIGHT HARVESTING PROTEIN B-800/850 protein | Length: 53

No structure alignment results are available for 1KZU.A, 1KZU.D, 1KZU.G explicitly.

These chains are represented by chain 1NKZ.a which is 100% sequence identical.

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View how chain 1KZU.G compares with the representative chain d1nkza_. Select a comparison method:


Entity #2 | Chains B,E,H

Description: LIGHT HARVESTING PROTEIN B-800/850 protein | Length: 41

No structure alignment results are available for 1KZU.B, 1KZU.E, 1KZU.H explicitly.

These chains are represented by chain 1NKZ.b which is 100% sequence identical.

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View how chain 1KZU.H compares with the representative chain d1nkzb_. Select a comparison method:


References