Structural Similarities for the Entities in PDB 1KYO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,L

Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I protein | Length: 430

No structure alignment results are available for 1KYO.A, 1KYO.L explicitly.

These chains are represented by chain 3CX5.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KYO.L compares with the representative chain d3cx5a1. Select a comparison method:


Entity #10 | Chains J,U

Description: HEAVY CHAIN (VH) OF FV-FRAGMENT protein | Length: 127

No structure alignment results are available for 1KYO.J, 1KYO.U explicitly.

These chains are represented by chain 4UNU.A which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KYO.U compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #11 | Chains K,V

Description: LIGHT CHAIN (VL) OF FV-FRAGMENT protein | Length: 107

No structure alignment results are available for 1KYO.K, 1KYO.V explicitly.

These chains are represented by chain 4UNU.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KYO.V compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #12 | Chains W

Description: CYTOCHROME C, ISO-1 protein | Length: 108

No structure alignment results are available for 1KYO.W explicitly.

It is represented by chain 4N0K.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KYO.W compares with the representative chain PDP:4N0KAa. Select a comparison method:


Entity #2 | Chains B,M

Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2 protein | Length: 352

No structure alignment results are available for 1KYO.B, 1KYO.M explicitly.

These chains are represented by chain 3CX5.b which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1KYO.M compares with the representative chain d3cx5b1. Select a comparison method:


Entity #3 | Chains C,N

Description: CYTOCHROME B protein | Length: 385

No structure alignment results are available for 1KYO.C, 1KYO.N explicitly.

These chains are represented by chain 3CX5.c which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KYO.N compares with the representative chain d3cx5c1. Select a comparison method:


Entity #4 | Chains D,O

Description: CYTOCHROME C1, HEME PROTEIN protein | Length: 248

No structure alignment results are available for 1KYO.D, 1KYO.O explicitly.

These chains are represented by chain 3CX5.d which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1KYO.O compares with the representative chain d3cx5d1. Select a comparison method:


Entity #5 | Chains E,P

Description: UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT protein | Length: 185

No structure alignment results are available for 1KYO.E, 1KYO.P explicitly.

These chains are represented by chain 3CX5.e which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1KYO.P compares with the representative chain d3cx5e1. Select a comparison method:


Entity #6 | Chains F,Q

Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN protein | Length: 74

No structure alignment results are available for 1KYO.F, 1KYO.Q explicitly.

These chains are represented by chain 1KB9.f which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1KYO.Q compares with the representative chain d1kb9f_. Select a comparison method:


Entity #7 | Chains G,R

Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN protein | Length: 126

No structure alignment results are available for 1KYO.G, 1KYO.R explicitly.

These chains are represented by chain 3CX5.g which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1KYO.R compares with the representative chain d3cx5g1. Select a comparison method:


Entity #8 | Chains H,S

Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C protein | Length: 93

No structure alignment results are available for 1KYO.H, 1KYO.S explicitly.

These chains are represented by chain 3CX5.h which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1KYO.S compares with the representative chain d3cx5h1. Select a comparison method:


Entity #9 | Chains I,T

Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN protein | Length: 57

No structure alignment results are available for 1KYO.I, 1KYO.T explicitly.

These chains are represented by chain 1KB9.i which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KYO.T compares with the representative chain d1kb9i_. Select a comparison method:


References