Structural Similarities for the Entities in PDB 1KXQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: alpha-amylase, pancreatic protein | Length: 496

No structure alignment results are available for 1KXQ.A, 1KXQ.B, 1KXQ.C, 1KXQ.D explicitly.

These chains are represented by chain 4X9Y.A which has more than 70% sequence identity.

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View how chain 1KXQ.D compares with the representative chain PDP:4X9YAa. Select a comparison method:


Entity #2 | Chains E,F,G,H

Description: antibody VHH fragment CABAMD9 protein | Length: 120

No structure alignment results are available for 1KXQ.E, 1KXQ.F, 1KXQ.G, 1KXQ.H explicitly.

These chains are represented by chain 4UNU.A which has more than 40% sequence identity.

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View how chain 1KXQ.H compares with the representative chain PDP:4UNUAa. Select a comparison method:


References