Structural Similarities for the Entities in PDB 1KTR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L

Description: Anti-his tag antibody 3d5 variable light chain protein | Length: 116

No structure alignment results are available for 1KTR.L explicitly.

It is represented by chain 4UNU.A which has more than 50% sequence identity.

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View how chain 1KTR.L compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #2 | Chains M

Description: Peptide linker protein | Length: 20

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Entity #3 | Chains H

Description: Anti-his tag antibody 3d5 variable heavy chain protein | Length: 114

No structure alignment results are available for 1KTR.H explicitly.

It is represented by chain 4UNU.A which has more than 40% sequence identity.

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View how chain 1KTR.H compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #4 | Chains P

Description: Oligohistidine peptide Antigen protein | Length: 6

This entity is too short to be considered for the all vs. all structure alignments.


References