Structural Similarities for the Entities in PDB 1KQ2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains R

Description: 5'-R(*AP*UP*UP*UP*UP*UP*G)-3' rna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B,H,I,K,M

Description: Host factor for Q beta protein | Length: 77

No structure alignment results are available for 1KQ2.A, 1KQ2.B, 1KQ2.H, 1KQ2.I, 1KQ2.K, 1KQ2.M explicitly.

These chains are represented by chain 1KQ1.a which is 100% sequence identical.

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View how chain 1KQ2.M compares with the representative chain d1kq1a_. Select a comparison method: