1KEN

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH AN ANTIBODY THAT PREVENTS THE HEMAGGLUTININ LOW PH FUSOGENIC TRANSITION



Structural Similarities for the Entities in PDB 1KEN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E

Description: hemagglutinin HA1 protein | Length: 328

No structure alignment results are available for 1KEN.A, 1KEN.C, 1KEN.E explicitly.

These chains are represented by chain 3KU3.A which has more than 40% sequence identity.

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Entity #2 | Chains B,D,F

Description: hemagglutinin HA2 protein | Length: 175

No structure alignment results are available for 1KEN.B, 1KEN.D, 1KEN.F explicitly.

These chains are represented by chain 3KU3.B which has more than 50% sequence identity.

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Entity #3 | Chains L,U

Description: influenza virus infectivity neutralizing antibody (light chain) protein | Length: 213

No structure alignment results are available for 1KEN.L, 1KEN.U explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #4 | Chains H,T

Description: influenza virus infectivity neutralizing antibody (heavy chain) protein | Length: 221

No structure alignment results are available for 1KEN.H, 1KEN.T explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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References