Structural Similarities for the Entities in PDB 1KEN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E

Description: hemagglutinin HA1 protein | Length: 328

No structure alignment results are available for 1KEN.A, 1KEN.C, 1KEN.E explicitly.

These chains are represented by chain 3KU3.A which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KEN.E compares with the representative chain PDP:3KU3Aa. Select a comparison method:


Entity #2 | Chains B,D,F

Description: hemagglutinin HA2 protein | Length: 175

No structure alignment results are available for 1KEN.B, 1KEN.D, 1KEN.F explicitly.

These chains are represented by chain 3KU3.B which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KEN.F compares with the representative chain PDP:3KU3Ba. Select a comparison method:


Entity #3 | Chains L,U

Description: influenza virus infectivity neutralizing antibody (light chain) protein | Length: 213

No structure alignment results are available for 1KEN.L, 1KEN.U explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KEN.U compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #4 | Chains H,T

Description: influenza virus infectivity neutralizing antibody (heavy chain) protein | Length: 221

No structure alignment results are available for 1KEN.H, 1KEN.T explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1KEN.T compares with the representative chain PDP:4NZULa. Select a comparison method:


References