Structural Similarities for the Entities in PDB 1K83

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-09-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein | Length: 1733

No structure alignment results are available for 1K83.A explicitly.

It is represented by chain 1TWF.A which is 100% sequence identical.

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Entity #10 | Chains L

Description: DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein | Length: 70

No structure alignment results are available for 1K83.L explicitly.

It is represented by chain 4C2M.1 which is 100% sequence identical.

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Entity #11 | Chains M

Description: ALPHA AMANITIN protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein | Length: 1224

No structure alignment results are available for 1K83.B explicitly.

It is represented by chain 1TWF.B which is 100% sequence identical.

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Entity #3 | Chains C

Description: DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein | Length: 318

No structure alignment results are available for 1K83.C explicitly.

It is represented by chain 1TWF.C which is 100% sequence identical.

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Entity #4 | Chains E

Description: DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein | Length: 215

No structure alignment results are available for 1K83.E explicitly.

It is represented by chain 1DZF.A which is 100% sequence identical.

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Entity #5 | Chains F

Description: DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein | Length: 155

No structure alignment results are available for 1K83.F explicitly.

It is represented by chain 4C2M.F which is 100% sequence identical.

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Entity #6 | Chains H

Description: DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein | Length: 146

No structure alignment results are available for 1K83.H explicitly.

It is represented by chain 4C2M.H which is 100% sequence identical.

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Entity #7 | Chains I

Description: DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein | Length: 122

No structure alignment results are available for 1K83.I explicitly.

It is represented by chain 1TWF.I which is 100% sequence identical.

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Entity #8 | Chains J

Description: DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein | Length: 70

No structure alignment results are available for 1K83.J explicitly.

It is represented by chain 4C2M.J which is 100% sequence identical.

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Entity #9 | Chains K

Description: DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein | Length: 120

No structure alignment results are available for 1K83.K explicitly.

It is represented by chain 1TWF.K which is 100% sequence identical.

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References