Structural Similarities for the Entities in PDB 1K5M

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: COAT PROTEIN VP1 (P1D) protein | Length: 289

No structure alignment results are available for 1K5M.A explicitly.

It is represented by chain 4Q4W.1 which has more than 40% sequence identity.

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Entity #2 | Chains B

Description: CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 protein | Length: 277

No structure alignment results are available for 1K5M.B explicitly.

It is represented by chain 4Q4W.2 which has more than 50% sequence identity.

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Entity #3 | Chains C

Description: COAT PROTEIN VP3 (P1C) protein | Length: 236

No structure alignment results are available for 1K5M.C explicitly.

It is represented by chain 4Q4W.3 which has more than 50% sequence identity.

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Entity #4 | Chains D

Description: COAT PROTEIN VP4 (P1A) protein | Length: 68

No structure alignment results are available for 1K5M.D explicitly.

It is represented by chain 4Q4W.4 which has more than 70% sequence identity.

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References