Structural Similarities for the Entities in PDB 1K5G

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J

Description: GTP-binding nuclear protein RAN protein | Length: 216

No structure alignment results are available for 1K5G.A, 1K5G.D, 1K5G.G, 1K5G.J explicitly.

These chains are represented by chain 3GJ0.A which is 100% sequence identical.

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View how chain 1K5G.J compares with the representative chain PDP:3GJ0Aa. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: Ran-specific GTPase-activating protein protein | Length: 201

No structure alignment results are available for 1K5G.B, 1K5G.E, 1K5G.H, 1K5G.K explicitly.

These chains are represented by chain 1K5D.b which is 100% sequence identical.

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Entity #3 | Chains C,F,I,L

Description: Ran GTPase activating protein 1 protein | Length: 386

No structure alignment results are available for 1K5G.C, 1K5G.F, 1K5G.I, 1K5G.L explicitly.

These chains are represented by chain 2CA6.a which is 100% sequence identical.

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References