Structural Similarities for the Entities in PDB 1JZX

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 23S rRNA rna | Length: 2880

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains K

Description: Ribosomal Protein L4 protein | Length: 205

No structure alignment results are available for 1JZX.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JZX.K compares with the representative chain xxxx. Select a comparison method:


Entity #3 | Chains L

Description: Ribosomal Protein L22 protein | Length: 134

No structure alignment results are available for 1JZX.L explicitly.

It is represented by chain 4IOA.P which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1JZX.L compares with the representative chain PDP:4IOAPa. Select a comparison method:


Entity #4 | Chains M

Description: Ribosomal Protein L32 protein | Length: 60

No structure alignment results are available for 1JZX.M explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JZX.M compares with the representative chain xxxx. Select a comparison method:


References