Structural Similarities for the Entities in PDB 1JY7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-10-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,P,R,U,W

Description: Hemoglobin alpha chain protein | Length: 141

No structure alignment results are available for 1JY7.A, 1JY7.C, 1JY7.P, 1JY7.R, 1JY7.U, 1JY7.W explicitly.

These chains are represented by chain 2W72.A which has more than 95% sequence identity.

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View how chain 1JY7.W compares with the representative chain PDP:2W72Aa. Select a comparison method:


Entity #2 | Chains B,D,Q,S,V,X

Description: Hemoglobin beta chain protein | Length: 146

No structure alignment results are available for 1JY7.B, 1JY7.D, 1JY7.Q, 1JY7.S, 1JY7.V, 1JY7.X explicitly.

These chains are represented by chain 2W72.A which has more than 90% sequence identity.

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View how chain 1JY7.X compares with the representative chain PDP:2W72Aa. Select a comparison method:


References