Structural Similarities for the Entities in PDB 1JWS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: HLA class II histocompatibility antigen, DR alpha chain protein | Length: 182

No structure alignment results are available for 1JWS.A explicitly.

It is represented by chain 4X5W.A which is 100% sequence identical.

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View how chain 1JWS.A compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #2 | Chains B

Description: HLA class II histocompatibility antigen, DR-1 beta chain protein | Length: 190

No structure alignment results are available for 1JWS.B explicitly.

It is represented by chain 4X5W.B which is 100% sequence identical.

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View how chain 1JWS.B compares with the representative chain PDP:4X5WBa. Select a comparison method:


Entity #3 | Chains C

Description: HA peptide protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains D

Description: Enterotoxin type C-3 protein | Length: 239

No structure alignment results are available for 1JWS.D explicitly.

It is represented by chain 3SEB.a which has more than 50% sequence identity.

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View how chain 1JWS.D compares with the representative chain d3seba1. Select a comparison method:


References