Structural Similarities for the Entities in PDB 1JNB

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L

Description: UPPER COLLAR PROTEIN protein | Length: 309

No structure alignment results are available for 1JNB.A, 1JNB.B, 1JNB.C, 1JNB.D, 1JNB.E, 1JNB.F, 1JNB.G, 1JNB.H, 1JNB.I, 1JNB.J, 1JNB.K, 1JNB.L explicitly.

These chains are represented by chain 1H5W.a which is 100% sequence identical.

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References