Structural Similarities for the Entities in PDB 1JN5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: p15 protein | Length: 140

No structure alignment results are available for 1JN5.A explicitly.

It is represented by chain 1JKG.a which is 100% sequence identical.

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View how chain 1JN5.A compares with the representative chain d1jkga_. Select a comparison method:


Entity #2 | Chains B

Description: TAP protein | Length: 250

No structure alignment results are available for 1JN5.B explicitly.

It is represented by chain 1JKG.b which is 100% sequence identical.

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View how chain 1JN5.B compares with the representative chain d1jkgb_. Select a comparison method:


Entity #3 | Chains C

Description: FG-repeat protein | Length: 12

This entity is too short to be considered for the all vs. all structure alignments.


References