Structural Similarities for the Entities in PDB 1JL4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K ALPHA CHAIN protein | Length: 178

No structure alignment results are available for 1JL4.A explicitly.

It is represented by chain 4X5W.A which has more than 50% sequence identity.

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View how chain 1JL4.A compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #2 | Chains B

Description: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN protein | Length: 185

No structure alignment results are available for 1JL4.B explicitly.

It is represented by chain 4X5W.B which has more than 70% sequence identity.

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View how chain 1JL4.B compares with the representative chain PDP:4X5WBa. Select a comparison method:


Entity #3 | Chains C

Description: OVOTRANSFERRIN protein | Length: 16

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains D

Description: T-CELL SURFACE GLYCOPROTEIN CD4 protein | Length: 178

No structure alignment results are available for 1JL4.D explicitly.

It is represented by chain 4H8W.C which is 100% sequence identical.

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View how chain 1JL4.D compares with the representative chain PDP:4H8WCa. Select a comparison method:


References