Structural Similarities for the Entities in PDB 1JGY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L

Description: Photosynthetic Reaction Center L Subunit protein | Length: 281

No structure alignment results are available for 1JGY.L explicitly.

It is represented by chain 2WJN.L which has more than 50% sequence identity.

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View how chain 1JGY.L compares with the representative chain PDP:2WJNLa. Select a comparison method:


Entity #2 | Chains M

Description: Photosynthetic Reaction Center M Subunit protein | Length: 307

No structure alignment results are available for 1JGY.M explicitly.

It is represented by chain 2WJN.M which has more than 50% sequence identity.

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Entity #3 | Chains H

Description: Photosynthetic Reaction Center H Subunit protein | Length: 260

No structure alignment results are available for 1JGY.H explicitly.

It is represented by chain 2WJN.H which has more than 40% sequence identity.

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References