1JGQ

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Structural Similarities for the Entities in PDB 1JGQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 30S 16S ribosomal RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: 30S RIBOSOMAL PROTEIN S7 protein | Length: 156

No structure alignment results are available for 1JGQ.J explicitly.

It is represented by chain 1RSS.a which is 100% sequence identical.

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Entity #11 | Chains K

Description: 30S RIBOSOMAL PROTEIN S8 protein | Length: 138

No structure alignment results are available for 1JGQ.K explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #12 | Chains L

Description: 30S RIBOSOMAL PROTEIN S9 protein | Length: 128

No structure alignment results are available for 1JGQ.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains M

Description: 30S RIBOSOMAL PROTEIN S10 protein | Length: 105

No structure alignment results are available for 1JGQ.M explicitly.

It is represented by chain 3D3B.J which has more than 50% sequence identity.

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Entity #14 | Chains N

Description: 30S RIBOSOMAL PROTEIN S11 protein | Length: 129

No structure alignment results are available for 1JGQ.N explicitly.

It is represented by chain 4CVN.E which has more than 40% sequence identity.

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Entity #15 | Chains O

Description: 30S RIBOSOMAL PROTEIN S12 protein | Length: 135

No structure alignment results are available for 1JGQ.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #16 | Chains P

Description: 30S RIBOSOMAL PROTEIN S13 protein | Length: 126

No structure alignment results are available for 1JGQ.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains Q

Description: 30S RIBOSOMAL PROTEIN S14 protein | Length: 61

No structure alignment results are available for 1JGQ.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains R

Description: 30S RIBOSOMAL PROTEIN S15 protein | Length: 89

No structure alignment results are available for 1JGQ.R explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #19 | Chains S

Description: 30S RIBOSOMAL PROTEIN S16 protein | Length: 91

No structure alignment results are available for 1JGQ.S explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B,C

Description: tRNA(Phe) rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains T

Description: 30S RIBOSOMAL PROTEIN S17 protein | Length: 105

No structure alignment results are available for 1JGQ.T explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #21 | Chains U

Description: 30S RIBOSOMAL PROTEIN S18 protein | Length: 88

No structure alignment results are available for 1JGQ.U explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #22 | Chains V

Description: 30S RIBOSOMAL PROTEIN S19 protein | Length: 93

No structure alignment results are available for 1JGQ.V explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #23 | Chains W

Description: 30S RIBOSOMAL PROTEIN S20 protein | Length: 106

No structure alignment results are available for 1JGQ.W explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #24 | Chains X

Description: 30S RIBOSOMAL PROTEIN THX protein | Length: 26

No structure alignment results are available for 1JGQ.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains D

Description: tRNA(Phe) rna | Length: 74

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains 1

Description: MESSENGER RNA MF36 rna | Length: 36

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains E

Description: 30S RIBOSOMAL PROTEIN S2 protein | Length: 256

No structure alignment results are available for 1JGQ.E explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains F

Description: 30S RIBOSOMAL PROTEIN S3 protein | Length: 239

No structure alignment results are available for 1JGQ.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains G

Description: 30S RIBOSOMAL PROTEIN S4 protein | Length: 209

No structure alignment results are available for 1JGQ.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains H

Description: 30S RIBOSOMAL PROTEIN S5 protein | Length: 162

No structure alignment results are available for 1JGQ.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #9 | Chains I

Description: 30S RIBOSOMAL PROTEIN S6 protein | Length: 101

No structure alignment results are available for 1JGQ.I explicitly.

It is represented by chain 1CQM.a which has more than 95% sequence identity.

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References