Structural Similarities for the Entities in PDB 1JGO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 30S 16S ribosomal RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: 30S RIBOSOMAL PROTEIN S7 protein | Length: 156

No structure alignment results are available for 1JGO.J explicitly.

It is represented by chain 1RSS.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1JGO.J compares with the representative chain d1rssa_. Select a comparison method:


Entity #11 | Chains K

Description: 30S RIBOSOMAL PROTEIN S8 protein | Length: 138

No structure alignment results are available for 1JGO.K explicitly.

It is represented by chain 1SEI.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.K compares with the representative chain d1seia_. Select a comparison method:


Entity #12 | Chains L

Description: 30S RIBOSOMAL PROTEIN S9 protein | Length: 128

No structure alignment results are available for 1JGO.L explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.L compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains M

Description: 30S RIBOSOMAL PROTEIN S10 protein | Length: 105

No structure alignment results are available for 1JGO.M explicitly.

It is represented by chain 3D3B.J which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.M compares with the representative chain PDP:3D3BJa. Select a comparison method:


Entity #14 | Chains N

Description: 30S RIBOSOMAL PROTEIN S11 protein | Length: 129

No structure alignment results are available for 1JGO.N explicitly.

It is represented by chain 4CVN.E which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.N compares with the representative chain PDP:4CVNEa. Select a comparison method:


Entity #15 | Chains O

Description: 30S RIBOSOMAL PROTEIN S12 protein | Length: 135

No structure alignment results are available for 1JGO.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.O compares with the representative chain xxxx. Select a comparison method:


Entity #16 | Chains P

Description: 30S RIBOSOMAL PROTEIN S13 protein | Length: 126

No structure alignment results are available for 1JGO.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.P compares with the representative chain xxxx. Select a comparison method:


Entity #17 | Chains Q

Description: 30S RIBOSOMAL PROTEIN S14 protein | Length: 61

No structure alignment results are available for 1JGO.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1JGO.Q compares with the representative chain xxxx. Select a comparison method:


Entity #18 | Chains R

Description: 30S RIBOSOMAL PROTEIN S15 protein | Length: 89

No structure alignment results are available for 1JGO.R explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.R compares with the representative chain PDP:4A5UBa. Select a comparison method:


Entity #19 | Chains S

Description: 30S RIBOSOMAL PROTEIN S16 protein | Length: 91

No structure alignment results are available for 1JGO.S explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.S compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains B,C

Description: tRNA(Phe) rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains T

Description: 30S RIBOSOMAL PROTEIN S17 protein | Length: 105

No structure alignment results are available for 1JGO.T explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.T compares with the representative chain xxxx. Select a comparison method:


Entity #21 | Chains U

Description: 30S RIBOSOMAL PROTEIN S18 protein | Length: 88

No structure alignment results are available for 1JGO.U explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.U compares with the representative chain xxxx. Select a comparison method:


Entity #22 | Chains V

Description: 30S RIBOSOMAL PROTEIN S19 protein | Length: 93

No structure alignment results are available for 1JGO.V explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.V compares with the representative chain xxxx. Select a comparison method:


Entity #23 | Chains W

Description: 30S RIBOSOMAL PROTEIN S20 protein | Length: 106

No structure alignment results are available for 1JGO.W explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.W compares with the representative chain xxxx. Select a comparison method:


Entity #24 | Chains X

Description: 30S RIBOSOMAL PROTEIN THX protein | Length: 26

No structure alignment results are available for 1JGO.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1JGO.X compares with the representative chain xxxx. Select a comparison method:


Entity #3 | Chains D

Description: tRNA(Phe) rna | Length: 74

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains 1

Description: MESSENGER RNA MK27 rna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains E

Description: 30S RIBOSOMAL PROTEIN S2 protein | Length: 256

No structure alignment results are available for 1JGO.E explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.E compares with the representative chain xxxx. Select a comparison method:


Entity #6 | Chains F

Description: 30S RIBOSOMAL PROTEIN S3 protein | Length: 239

No structure alignment results are available for 1JGO.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1JGO.F compares with the representative chain xxxx. Select a comparison method:


Entity #7 | Chains G

Description: 30S RIBOSOMAL PROTEIN S4 protein | Length: 209

No structure alignment results are available for 1JGO.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.G compares with the representative chain xxxx. Select a comparison method:


Entity #8 | Chains H

Description: 30S RIBOSOMAL PROTEIN S5 protein | Length: 162

No structure alignment results are available for 1JGO.H explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.H compares with the representative chain xxxx. Select a comparison method:


Entity #9 | Chains I

Description: 30S RIBOSOMAL PROTEIN S6 protein | Length: 101

No structure alignment results are available for 1JGO.I explicitly.

It is represented by chain 1CQM.A which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 1JGO.I compares with the representative chain d1cqma_. Select a comparison method:


References