The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
You can also use the structure comparison tool to compare any 2 given structures
Description: 30S 16S ribosomal RNA rna | Length: 1522
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: 30S RIBOSOMAL PROTEIN S7 protein | Length: 156
It is represented by chain 1RSS.a which is 100% sequence identical.
View how chain 1JGO.J compares with the representative chain d1rssa_. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S8 protein | Length: 138
It is represented by chain 1SEI.a which has more than 50% sequence identity.
View how chain 1JGO.K compares with the representative chain d1seia_. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S9 protein | Length: 128
It is represented by chain XXXX.null which has more than 50% sequence identity.
View how chain 1JGO.L compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S10 protein | Length: 105
It is represented by chain 3D3B.J which has more than 50% sequence identity.
View how chain 1JGO.M compares with the representative chain PDP:3D3BJa. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S11 protein | Length: 129
It is represented by chain 4CVN.E which has more than 40% sequence identity.
View how chain 1JGO.N compares with the representative chain PDP:4CVNEa. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S12 protein | Length: 135
It is represented by chain XXXX.null which has more than 70% sequence identity.
View how chain 1JGO.O compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S13 protein | Length: 126
View how chain 1JGO.P compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S14 protein | Length: 61
It is represented by chain XXXX.null which is 100% sequence identical.
View how chain 1JGO.Q compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S15 protein | Length: 89
It is represented by chain 4A5U.B which has more than 50% sequence identity.
View how chain 1JGO.R compares with the representative chain PDP:4A5UBa. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S16 protein | Length: 91
It is represented by chain XXXX.null which has more than 40% sequence identity.
View how chain 1JGO.S compares with the representative chain xxxx. Select a comparison method:
Description: tRNA(Phe) rna | Length: 76
Description: 30S RIBOSOMAL PROTEIN S17 protein | Length: 105
View how chain 1JGO.T compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S18 protein | Length: 88
View how chain 1JGO.U compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S19 protein | Length: 93
View how chain 1JGO.V compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S20 protein | Length: 106
View how chain 1JGO.W compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN THX protein | Length: 26
View how chain 1JGO.X compares with the representative chain xxxx. Select a comparison method:
Description: tRNA(Phe) rna | Length: 74
Description: MESSENGER RNA MK27 rna | Length: 27
Description: 30S RIBOSOMAL PROTEIN S2 protein | Length: 256
View how chain 1JGO.E compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S3 protein | Length: 239
View how chain 1JGO.F compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S4 protein | Length: 209
View how chain 1JGO.G compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S5 protein | Length: 162
View how chain 1JGO.H compares with the representative chain xxxx. Select a comparison method:
Description: 30S RIBOSOMAL PROTEIN S6 protein | Length: 101
It is represented by chain 1CQM.a which has more than 95% sequence identity.
View how chain 1JGO.I compares with the representative chain d1cqma_. Select a comparison method: