Structural Similarities for the Entities in PDB 1JEW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains R

Description: COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR protein | Length: 120

No structure alignment results are available for 1JEW.R explicitly.

It is represented by chain 1EAJ.a which is 100% sequence identical.

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Entity #2 | Chains 1

Description: COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1 protein | Length: 281

No structure alignment results are available for 1JEW.1 explicitly.

It is represented by chain 4Q4W.1 which has more than 40% sequence identity.

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Entity #3 | Chains 2

Description: COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2 protein | Length: 263

No structure alignment results are available for 1JEW.2 explicitly.

It is represented by chain 4Q4W.2 which has more than 50% sequence identity.

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Entity #4 | Chains 3

Description: COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 protein | Length: 238

No structure alignment results are available for 1JEW.3 explicitly.

It is represented by chain 4Q4W.3 which has more than 50% sequence identity.

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Entity #5 | Chains 4

Description: COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4 protein | Length: 68

No structure alignment results are available for 1JEW.4 explicitly.

It is represented by chain 4Q4W.4 which has more than 70% sequence identity.

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References