Structural Similarities for the Entities in PDB 1JB0

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-14-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 protein | Length: 755

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Entity #10 | Chains L

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XI protein | Length: 154

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Entity #11 | Chains M

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT XII protein | Length: 31

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Entity #12 | Chains X

Description: PHOTOSYSTEM I SUBUNIT PSAX protein | Length: 35

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Entity #2 | Chains B

Description: PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2 protein | Length: 740

No structure alignment results are available for 1JB0.B explicitly.

It is represented by chain 1JB0.a which has more than 40% sequence identity.

Show structure comparison results

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View how chain 1JB0.B compares with the representative chain d1jb0a_. Select a comparison method:


Entity #3 | Chains C

Description: PHOTOSYSTEM I IRON-SULFUR CENTER protein | Length: 80

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Entity #4 | Chains D

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT II protein | Length: 138

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Entity #5 | Chains E

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IV protein | Length: 75

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Entity #6 | Chains F

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT III protein | Length: 164

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Entity #7 | Chains I

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT VIII protein | Length: 38

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Entity #8 | Chains J

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT IX protein | Length: 41

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Entity #9 | Chains K

Description: PHOTOSYSTEM 1 REACTION CENTRE SUBUNIT X protein | Length: 83

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References