Structural Similarities for the Entities in PDB 1J2Q

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G

Description: Proteasome alpha subunit protein | Length: 237

No structure alignment results are available for 1J2Q.A, 1J2Q.B, 1J2Q.C, 1J2Q.D, 1J2Q.E, 1J2Q.F, 1J2Q.G explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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View how chain 1J2Q.G compares with the representative chain PDP:5LE5Aa. Select a comparison method:


Entity #2 | Chains H,I,J,K,L,M,N

Description: Proteasome beta subunit protein | Length: 202

No structure alignment results are available for 1J2Q.H, 1J2Q.I, 1J2Q.J, 1J2Q.K, 1J2Q.L, 1J2Q.M, 1J2Q.N explicitly.

These chains are represented by chain 1YAR.h which has more than 50% sequence identity.

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View how chain 1J2Q.N compares with the representative chain d1yarh1. Select a comparison method:


References