Structural Similarities for the Entities in PDB 1J1D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: Troponin C protein | Length: 161

No structure alignment results are available for 1J1D.A, 1J1D.D explicitly.

These chains are represented by chain 1EXR.a which has more than 50% sequence identity.

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View how chain 1J1D.D compares with the representative chain d1exra_. Select a comparison method:


Entity #2 | Chains B,E

Description: Troponin T protein | Length: 106

No structure alignment results are available for 1J1D.B, 1J1D.E explicitly.

These chains are represented by chain 4Y99.B which is 100% sequence identical.

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View how chain 1J1D.E compares with the representative chain PDP:4Y99B_. Select a comparison method:


Entity #3 | Chains C,F

Description: Troponin I protein | Length: 133

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References