Structural Similarities for the Entities in PDB 1IZL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Dec-31-1969

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,J

Description: Photosystem II: Subunit PsbA protein | Length: 360

No structure alignment results are available for 1IZL.A, 1IZL.J explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #10 | Chains K,W

Description: Photosystem II: Subunit PsbK protein | Length: 37

No structure alignment results are available for 1IZL.K, 1IZL.W explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains O,Y

Description: Photosystem II: Subunit PsbO protein | Length: 205

Entity #12 | Chains U,Z

Description: Photosystem II: Subunit PsbU protein | Length: 97

Entity #13 | Chains 0,V

Description: Photosystem II: Subunit PsbV protein | Length: 137

No structure alignment results are available for 1IZL.0, 1IZL.V explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #14 | Chains 1,X

Description: Photosystem II: Subunit PsbX protein | Length: 25

Entity #2 | Chains B,L

Description: Photosystem II: Subunit PsbB protein | Length: 472

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Entity #3 | Chains C,M

Description: Photosystem II: Subunit PsbC protein | Length: 473

No structure alignment results are available for 1IZL.C, 1IZL.M explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains D,N

Description: Photosystem II: Subunit PsbD protein | Length: 352

No structure alignment results are available for 1IZL.D, 1IZL.N explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains E,P

Description: Photosystem II: Subunit PsbE protein | Length: 83

No structure alignment results are available for 1IZL.E, 1IZL.P explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains F,Q

Description: Photosystem II: Subunit PsbF protein | Length: 44

No structure alignment results are available for 1IZL.F, 1IZL.Q explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains G,R

Description: Photosystem II: Subunit PsbG protein | Length: 220

Entity #8 | Chains H,S

Description: Photosystem II: Subunit PsbH protein | Length: 33

Entity #9 | Chains I,T

Description: Photosystem II: Subunit PsbI protein | Length: 26

References