Structural Similarities for the Entities in PDB 1IW7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,K,L

Description: RNA polymerase alpha subunit protein | Length: 315

No structure alignment results are available for 1IW7.A, 1IW7.B, 1IW7.K, 1IW7.L explicitly.

These chains are represented by chain 2A6H.a which is 100% sequence identical.

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View how chain 1IW7.L compares with the representative chain d2a6ha1. Select a comparison method:


Entity #2 | Chains C,M

Description: RNA polymerase beta subunit protein | Length: 1119

No structure alignment results are available for 1IW7.C, 1IW7.M explicitly.

These chains are represented by chain 2A6H.c which is 100% sequence identical.

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View how chain 1IW7.M compares with the representative chain d2a6hc1. Select a comparison method:


Entity #3 | Chains D,N

Description: RNA polymerase beta subunit protein | Length: 1524

No structure alignment results are available for 1IW7.D, 1IW7.N explicitly.

These chains are represented by chain 2A6H.d which is 100% sequence identical.

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View how chain 1IW7.N compares with the representative chain d2a6hd1. Select a comparison method:


Entity #4 | Chains E,O

Description: RNA polymerase omega subunit protein | Length: 99

No structure alignment results are available for 1IW7.E, 1IW7.O explicitly.

These chains are represented by chain 2A6H.e which is 100% sequence identical.

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Entity #5 | Chains F,P

Description: RNA polymerase sigma-70 subunit protein | Length: 423

No structure alignment results are available for 1IW7.F, 1IW7.P explicitly.

These chains are represented by chain 2A6H.f which is 100% sequence identical.

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View how chain 1IW7.P compares with the representative chain d2a6hf1. Select a comparison method:


References