Structural Similarities for the Entities in PDB 1IR2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,S,T,U,V,W,X,Y,Z

Description: Large subunit of Rubisco protein | Length: 475

No structure alignment results are available for 1IR2.A, 1IR2.B, 1IR2.C, 1IR2.D, 1IR2.E, 1IR2.F, 1IR2.G, 1IR2.H, 1IR2.S, 1IR2.T, 1IR2.U, 1IR2.V, 1IR2.W, 1IR2.X, 1IR2.Y, 1IR2.Z explicitly.

These chains are represented by chain 1WDD.a which has more than 90% sequence identity.

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View how chain 1IR2.Z compares with the representative chain d1wdda1. Select a comparison method:


Entity #2 | Chains 1,2,3,4,5,6,7,8,I,J,K,L,M,N,O,P

Description: Small subunit of Rubisco protein | Length: 140

No structure alignment results are available for 1IR2.1, 1IR2.2, 1IR2.3, 1IR2.4, 1IR2.5, 1IR2.6, 1IR2.7, 1IR2.8, 1IR2.I, 1IR2.J, 1IR2.K, 1IR2.L, 1IR2.M, 1IR2.N, 1IR2.O, 1IR2.P explicitly.

These chains are represented by chain 1WDD.s which has more than 50% sequence identity.

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View how chain 1IR2.P compares with the representative chain d1wdds_. Select a comparison method:


References