Structural Similarities for the Entities in PDB 1IM3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E,I,M

Description: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN protein | Length: 275

No structure alignment results are available for 1IM3.A, 1IM3.E, 1IM3.I, 1IM3.M explicitly.

These chains are represented by chain 1K5N.a which has more than 70% sequence identity.

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View how chain 1IM3.M compares with the representative chain d1k5na1. Select a comparison method:


Entity #2 | Chains B,F,J,N

Description: beta-2-microglobulin protein | Length: 100

No structure alignment results are available for 1IM3.B, 1IM3.F, 1IM3.J, 1IM3.N explicitly.

These chains are represented by chain 1K5N.b which is 100% sequence identical.

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View how chain 1IM3.N compares with the representative chain d1k5nb_. Select a comparison method:


Entity #3 | Chains C,G,K,O

Description: Human T-cell lymphotropic virus type 1 Tax peptide protein | Length: 9

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains D,H,L,P

Description: cytomegalovirus protein US2 protein | Length: 95

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References