Structural Similarities for the Entities in PDB 1II8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Rad50 ABC-ATPase protein | Length: 195

No structure alignment results are available for 1II8.A explicitly.

It is represented by chain 3QKS.A which is 100% sequence identical.

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View how chain 1II8.A compares with the representative chain PDP:3QKSAa. Select a comparison method:


Entity #2 | Chains B

Description: Rad50 ABC-ATPase protein | Length: 174

No structure alignment results are available for 1II8.B explicitly.

It is represented by chain 3QKS.B which is 100% sequence identical.

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View how chain 1II8.B compares with the representative chain PDP:3QKSBa. Select a comparison method:


References